PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_16AD8DEEC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 269aa    MW: 30854.4 Da    PI: 5.8879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_16AD8DEEC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind637.3e-2015242102
                            HHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  42 pkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                            p+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++ikr+k 
  Traes_5AL_16AD8DEEC.1   1 PRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLRNIKRRKP 52 
                            68***********************999.........**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004473.3E-16150IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.3E-19150IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-13150IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.49E-17150IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
PRYFKHGNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ RHLLRNIKRR KPTHGSQNQQ  60
SLGSYLEVGN FGHDVEIDHL KRDRQLLMAE VVKLRQEQQN TRSDLQAMEK RLQGTEQKQQ  120
QMMSFLARVM QNPMFIHHLL SQSEMRKELE DAISNKRRRR IDQGPEAVDS MGTGSTLEQG  180
SQVMFEQQEP VDSLVNGVIS DLESSSVDTK GAEVQQSVAS SRSEQLRGRP SGELNDDFWE  240
DLLHEGGLGE EASNLVVPDD MNLLAEKLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160KRRRRI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581480.0AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557472.11e-156PREDICTED: heat stress transcription factor A-2e-like
SwissprotQ6F3881e-141HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLW5EUZ00.0W5EUZ0_WHEAT; Uncharacterized protein
STRINGMLOC_21277.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-70heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]